One-Pot Breakfast Casserole Muffins

Featured in: Warm Breads & Bakes

These one-pot breakfast casserole muffins combine eggs, cheese, and fresh vegetables into portable, savory bites ideal for busy mornings. With simple prep and quick baking, they provide a satisfying start to the day, versatile for serving warm or chilled, and perfect for meal planning. Variations include adding protein like bacon or sausage or creating vegetarian versions by increasing veggies. Enjoy a flavorful and nourishing breakfast option that stores well and adapts easily.

Updated on Wed, 19 Nov 2025 14:25:00 GMT
Golden-brown One-Pot Breakfast Casserole Muffins filled with savory cheese, eggs, and veggies, ready to enjoy. Save
Golden-brown One-Pot Breakfast Casserole Muffins filled with savory cheese, eggs, and veggies, ready to enjoy. | dunebasil.com

Savory, portable breakfast muffins packed with eggs, cheese, and veggies, these one-pot breakfast casserole muffins are perfect for meal prep. They are budget-friendly and delicious hot or cold.

I first made these muffins for a busy workweek, and they quickly became my family's favorite grab-and-go breakfast. With so many ways to customize, everyone gets exactly what they want.

Ingredients

  • Base: 8 large eggs, 1/3 cup whole milk (or dairy-free alternative)
  • Vegetables: 1 cup baby spinach, chopped, 1/2 cup red bell pepper, diced, 1/2 cup onion, finely chopped
  • Protein (optional): 3/4 cup cooked bacon or breakfast sausage, crumbled (omit for vegetarian)
  • Cheese: 1 cup shredded cheddar cheese (or Monterey Jack)
  • Seasonings: 1/2 teaspoon salt, 1/4 teaspoon black pepper, 1/4 teaspoon smoked paprika
  • Oils: 1 tablespoon olive oil or nonstick spray (for greasing muffin tin)

Instructions

Prep:
Preheat oven to 350°F (175°C). Grease a 12-cup muffin tin with olive oil or nonstick spray.
Mix:
In a large bowl, whisk together eggs and milk until fully combined.
Add Ingredients:
Stir in spinach, bell pepper, onion, cooked bacon or sausage (if using), cheese, salt, black pepper, and smoked paprika.
Portion:
Divide the mixture evenly among the 12 muffin cups, filling each about 3/4 full.
Bake:
Bake for 22–25 minutes, or until muffins are set and lightly golden.
Finish:
Cool in the tin for 5 minutes, then run a knife around the edges and remove muffins. Serve warm or allow to cool completely for storage.
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| dunebasil.com

Making these together on Sunday mornings turns breakfast prep into a fun family time. The kids enjoy choosing their own add-ins and helping to fill the muffin cups.

Required Tools

12-cup muffin tin, mixing bowl, whisk, knife and cutting board, oven

Allergen Information

Contains eggs, milk (dairy), cheese (dairy). May contain pork (if using bacon/sausage). For dairy-free, use plant-based milk and cheese. Always check ingredient labels.

Nutritional Information

Per muffin (with bacon and cheddar): 130 calories, 9 g total fat, 2 g carbohydrates, 9 g protein

Freshly baked One-Pot Breakfast Casserole Muffins, dotted with visible red peppers and cheesy goodness, perfect for breakfast. Save
Freshly baked One-Pot Breakfast Casserole Muffins, dotted with visible red peppers and cheesy goodness, perfect for breakfast. | dunebasil.com

Enjoy these breakfast casserole muffins warm, or pack them in lunchboxes for a satisfying meal anytime. Their versatility and easy prep make them a weekly staple.

Recipe FAQs

Can I make these muffins vegetarian?

Yes, simply omit bacon or sausage and increase the vegetables like mushrooms or zucchini for added flavor and texture.

How do I store these casserole muffins?

Refrigerate for up to 4 days or freeze for up to 2 months. Reheat in the microwave or oven before serving.

What types of cheese work best?

Shredded cheddar cheese or Monterey Jack are ideal for melting and adding richness, but other cheeses can be used based on preference.

Can I prepare these muffins ahead of time?

Yes, they are perfect for meal prep. Simply bake and store, then enjoy warm or cold as convenient.

Are there dairy-free options available?

Absolutely. Substitute whole milk with plant-based alternatives and use dairy-free cheese to accommodate dietary needs.

One-Pot Breakfast Casserole Muffins

Portable breakfast muffins with eggs, cheese, veggies; great hot or cold, easy meal prep.

Prep Time
15 minutes
Time to Cook
25 minutes
Overall Time
40 minutes
Recipe by Dune Basil Lea Romano


Skill Level Easy

Cuisine American

Makes 12 Portions

Diet Information No Gluten, Reduced-Carb

What You'll Need

Base

01 8 large eggs
02 1/3 cup whole milk or dairy-free alternative

Vegetables

01 1 cup baby spinach, chopped
02 1/2 cup red bell pepper, diced
03 1/2 cup onion, finely chopped

Protein (optional)

01 3/4 cup cooked bacon or breakfast sausage, crumbled

Cheese

01 1 cup shredded cheddar cheese or Monterey Jack

Seasonings

01 1/2 teaspoon salt
02 1/4 teaspoon black pepper
03 1/4 teaspoon smoked paprika

Oils

01 1 tablespoon olive oil or nonstick spray for greasing

How to Make It

Step 01

Preheat and Prepare: Preheat oven to 350°F (175°C). Grease a 12-cup muffin tin with olive oil or nonstick spray.

Step 02

Combine Base Ingredients: Whisk together eggs and milk in a large bowl until fully blended.

Step 03

Add Vegetables, Protein, Cheese, and Seasonings: Fold in chopped spinach, diced red bell pepper, chopped onion, crumbled cooked bacon or sausage if desired, shredded cheese, salt, black pepper, and smoked paprika.

Step 04

Portion Mixture: Divide the mixture evenly among the 12 muffin cups, filling each about three-quarters full.

Step 05

Bake: Bake for 22 to 25 minutes, or until the muffins are set and lightly golden on top.

Step 06

Cool and Serve: Let muffins cool in the tin for 5 minutes. Then run a knife around the edges and remove. Serve warm or cool completely for storage.

Essential Tools

  • 12-cup muffin tin
  • Mixing bowl
  • Whisk
  • Knife and cutting board
  • Oven

Allergy Details

Review ingredients for allergies, and talk to your doctor if you're uncertain.
  • Contains eggs and dairy (milk, cheese); may contain pork if using bacon or sausage.

Nutrition per serving

Nutritional details are for reference only. They're not a substitute for medical advice.
  • Energy: 130
  • Fats: 9 g
  • Carbohydrates: 2 g
  • Proteins: 9 g